Single Cell RNA-Seq Workshop

Dates:

December 9th, 10th, and 12th

Times:

9:00AM- 4:00PM

Location:

Inasmuch Foundation Atrium in Robert M Bird Library

Schedule

Day	Date	Instructors	Topic	Pre-reading	Slides
1-AM	12/09	Kylie Williams Hande Acar	Logging into OSCER, Sample Prep, and Sequencing	📚	📺
1-PM	12/09	Kylie Williams Hande Acar	Using Cellranger, Quality Control Measures	📚	📺
2-AM	12/10	Lindsay Hayes	Seurat Objects and Clustering	📚	📺
2-PM	12/10	Lindsay Hayes	Annotating cells and Subclustering	📚	📺
3-AM	12/12	Kurt Zimmerman	Downstream Analysis Pipelines - Pseudotime Analysis using Monocle and Cell-Cell Communication using Nichenet/Cellchats	📚	📺
3-PM	12/12	Kurt Zimmerman	Downstream Analysis Pipelines - Pathway/Transcription Factor Inference	📚	📺